Query disease-to-gene associations (MIDAS) — query_disease_genes • unitcm

Given a disease query, find associated genes across multiple evidence sources.

Usage

query_disease_genes(
  disease_query,
  disease_id_type = "name",
  sources = NULL,
  min_sources = 1L,
  scoring_method = "max",
  page = 1L,
  page_size = 20L
)

Arguments

disease_query: Disease name or ID.
disease_id_type: ID type: "name" (default) or "icd11".
sources: Character vector of source databases (or NULL for all).
min_sources: Minimum supporting sources (default 1).
scoring_method: Scoring method: "max" (default) or "mean".
page: Page number (default 1).
page_size: Results per page (default 20).

Value

A tibble::tibble() of disease-gene associations with attribute "matched_diseases".

Examples

if (FALSE) { # \dontrun{
query_disease_genes("breast cancer")
} # }