Search SEA (ChEMBL similarity) predicted compound-target interactions — search_target2np_sea • unitcm

Query SEA-style predictions derived from ChEMBL similarity scoring, with optional adjusted p-value filtering.

Usage

search_target2np_sea(
  search = NULL,
  search_field = c("all", "gene_symbol", "compound_name", "uniprot_id", "inchikey"),
  search_mode = c("exact", "fuzzy"),
  max_pvalue = NULL,
  confidence = NULL,
  page = 1L,
  page_size = 20L,
  all_pages = FALSE
)

Arguments

search: Free-text search.
search_field: One of "all", "gene_symbol", "compound_name", "uniprot_id", or "inchikey".
search_mode: "exact" or "fuzzy".
max_pvalue: Maximum adjusted p-value.
confidence: One of "high" (adj. p < 0.01), "medium" (0.01-0.05), "low" (>= 0.05).
page, page_size: Pagination.
all_pages: If TRUE, fetch all pages.

Value

A tibble::tibble() of SEA predictions with attribute "total".

Examples

if (FALSE) { # \dontrun{
search_target2np_sea(search = "quercetin", confidence = "high")
} # }