Combine experimental records, DrugCLIP predictions, and SEA predictions
for one query, returning source counts, target/compound overlap sets,
confidence distributions, cross-validated compound-target pairs, and
an interpretive suggestion string.
Usage
target2np_multi_source_summary(
search = NULL,
sources = c("experimental", "drugclip", "sea"),
search_field = c("all", "gene_symbol", "compound_name", "uniprot_id", "inchikey",
"pubchem_cid", "chembl_id"),
search_mode = c("exact", "fuzzy")
)
Arguments
- search
Free-text search query.
- sources
Character vector of sources to query. Subset of
c("experimental", "drugclip", "sea") (default: all three).
- search_field
One of "all", "gene_symbol", "compound_name",
"uniprot_id", "inchikey", "pubchem_cid", "chembl_id".
- search_mode
"exact" or "fuzzy".
Value
A named list with fields source_counts, target_overlap,
compound_overlap, confidence_distribution, cross_validated,
and suggestion_text.
Examples
if (FALSE) { # \dontrun{
summary <- target2np_multi_source_summary(
search = "TP53", search_field = "gene_symbol"
)
summary$source_counts
summary$suggestion_text
} # }
